Placeholder image of a protein
Icon representing a puzzle

475: U2 RNA auxiliary factor Freestyle

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
October 30, 2011
Expires
Max points
100
Description

This U2 small nuclear ribonucleoprotein auxiliary factor protein is currently unsolved by x-ray crystallography. We are giving it to you as a freestyle puzzle. Please use the secondary structure predictions that are posted in the puzzle comments, as we believe them to be very accurate. We have included them in the starting structure as well.

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 10,393
  2. Avatar for Deleted group 2. Deleted group pts. 10,307
  3. Avatar for foldeRNA 3. foldeRNA 78 pts. 10,277
  4. Avatar for Go Science 4. Go Science 69 pts. 10,232
  5. Avatar for Anthropic Dreams 5. Anthropic Dreams 60 pts. 10,231
  6. Avatar for Russian team 6. Russian team 53 pts. 10,117
  7. Avatar for Void Crushers 7. Void Crushers 46 pts. 10,111
  8. Avatar for L'Alliance Francophone 8. L'Alliance Francophone 40 pts. 10,105
  9. Avatar for Androids 9. Androids 34 pts. 10,100
  10. Avatar for xkcd 10. xkcd 29 pts. 10,009
  1. Avatar for bronaldo 131. bronaldo Lv 1 23 pts. 9,525
  2. Avatar for Oblique 132. Oblique Lv 1 23 pts. 9,524
  3. Avatar for DrMistry 133. DrMistry Lv 1 22 pts. 9,523
  4. Avatar for frage 134. frage Lv 1 22 pts. 9,517
  5. Avatar for twisted1 135. twisted1 Lv 1 22 pts. 9,515
  6. Avatar for krulon 136. krulon Lv 1 22 pts. 9,514
  7. Avatar for baxterchem 137. baxterchem Lv 1 21 pts. 9,514
  8. Avatar for Kevonni 138. Kevonni Lv 1 21 pts. 9,510
  9. Avatar for demeter900 139. demeter900 Lv 1 21 pts. 9,507
  10. Avatar for La_Do 140. La_Do Lv 1 20 pts. 9,506

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the three Valines at residues 87-89 are highly predicted to be part of a sheet. However, the Valine at residue 31 is highly predicted to be part of a helix.