Placeholder image of a protein
Icon representing a puzzle

485: Quick Alignment Puzzle 482

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
November 27, 2011
Expires
Max points
100
Description

This is a quick repost of Puzzle 482: Advanced Alignment Puzzle, but this time we are providing you with secondary structure predictions that are posted in the puzzle comments and included in the starting structure as well. These predictions are from the SAM-T08 server (as requested in the previous puzzle comments: http://fold.it/portal/node/991105). Check out that page for more hints and make sure you beat Intro Puzzles 6-1 through 6-3 before playing this puzzle.

Top groups

  1. Avatar for Deleted group 11. Deleted group pts. 10,001
  2. Avatar for Russian team 12. Russian team 8 pts. 9,855
  3. Avatar for chillerdown 13. chillerdown 6 pts. 9,795
  4. Avatar for SETI.Germany 14. SETI.Germany 4 pts. 9,542
  5. Avatar for Bree Fradley Manning 15. Bree Fradley Manning 3 pts. 9,494
  6. Avatar for Foldit UK 16. Foldit UK 2 pts. 9,332
  7. Avatar for Team Canada 17. Team Canada 2 pts. 9,126
  8. Avatar for Crunching Family 18. Crunching Family 1 pt. 9,054
  9. Avatar for HMT heritage 19. HMT heritage 1 pt. 9,034
  10. Avatar for Valencia 20. Valencia 1 pt. 8,988
  1. Avatar for boondog 101. boondog Lv 1 14 pts. 9,586
  2. Avatar for michaelsgdec 102. michaelsgdec Lv 1 13 pts. 9,568
  3. Avatar for Kevonni 103. Kevonni Lv 1 13 pts. 9,567
  4. Avatar for lynnai 104. lynnai Lv 1 13 pts. 9,563
  5. Avatar for Brewster 105. Brewster Lv 1 13 pts. 9,563
  6. Avatar for Tyggy Too 106. Tyggy Too Lv 1 12 pts. 9,562
  7. Avatar for Jean-Bob 107. Jean-Bob Lv 1 12 pts. 9,544
  8. Avatar for FreeFolder 108. FreeFolder Lv 1 12 pts. 9,543
  9. Avatar for aendgraend 109. aendgraend Lv 1 11 pts. 9,542
  10. Avatar for content 110. content Lv 1 11 pts. 9,525

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the two Valines at residues 84 & 86 are highly predicted to be part of a sheet. However, the Valine at residue 9 is predicted to be either part of a loop or sheet.