Placeholder image of a protein
Icon representing a puzzle

485: Quick Alignment Puzzle 482

Closed since over 14 years ago

Intermediate Overall Prediction

Summary

Created
November 27, 2011
Expires
Max points
100
Description

This is a quick repost of Puzzle 482: Advanced Alignment Puzzle, but this time we are providing you with secondary structure predictions that are posted in the puzzle comments and included in the starting structure as well. These predictions are from the SAM-T08 server (as requested in the previous puzzle comments: http://fold.it/portal/node/991105). Check out that page for more hints and make sure you beat Intro Puzzles 6-1 through 6-3 before playing this puzzle.

Top groups

  1. Avatar for BOINC@Poland 21. BOINC@Poland 1 pt. 8,891
  2. Avatar for Koronan ChemistryUO Poland 22. Koronan ChemistryUO Poland 1 pt. 8,803
  3. Avatar for Eὕρηκα! Heureka! 23. Eὕρηκα! Heureka! 1 pt. 8,550
  4. Avatar for CHNO Junkies 24. CHNO Junkies 1 pt. 8,438
  5. Avatar for Czech National Team 25. Czech National Team 1 pt. 8,355
  6. Avatar for Team Germany 26. Team Germany 1 pt. 7,378
  7. Avatar for DSN @ Home 27. DSN @ Home 1 pt. 6,201
  8. Avatar for ROMANIA Team 28. ROMANIA Team 1 pt. 1,833
  1. Avatar for smilingone 41. smilingone Lv 1 50 pts. 10,001
  2. Avatar for Hanto_FZ140E_4G 42. Hanto_FZ140E_4G Lv 1 49 pts. 9,987
  3. Avatar for spvincent 43. spvincent Lv 1 48 pts. 9,985
  4. Avatar for Jim Fraser 44. Jim Fraser Lv 1 47 pts. 9,971
  5. Avatar for gramps 45. gramps Lv 1 46 pts. 9,971
  6. Avatar for martinzblavy 46. martinzblavy Lv 1 45 pts. 9,969
  7. Avatar for LUKE1967 47. LUKE1967 Lv 1 44 pts. 9,966
  8. Avatar for Flagg65a 48. Flagg65a Lv 1 43 pts. 9,965
  9. Avatar for pvc78 49. pvc78 Lv 1 42 pts. 9,953
  10. Avatar for jermainiac 50. jermainiac Lv 1 42 pts. 9,948

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the two Valines at residues 84 & 86 are highly predicted to be part of a sheet. However, the Valine at residue 9 is predicted to be either part of a loop or sheet.