Foldit

508: CASP ROLL Target R0005

Closed since about 14 years ago

Intermediate Overall Prediction

Summary

Created: January 30, 2012
Expires: February 06, 2012 at 19:00 UTC
Max points: 100

Description

The fifth CASP ROLL target, R0005, is due in 2 weeks so we are skipping the freestyle puzzle and providing you with server predictions. Luckily this is not a big protein and the Alignment Tool has an extended chain that you can work with (if you don't want to be influenced by the server predictions). Resetting the puzzle will cycle through 10 different server predictions. They are also available in the Alignment Tool so you can use partial threading. The secondary structure prediction are posted in the puzzle comments.

Top groups

11. chillerdown 25 pts. 9,818
12. SETI.Germany 21 pts. 9,764
13. Needles and Pins 18 pts. 9,716
14. Deleted group pts. 9,712
15. Deleted group pts. 9,640
16. Deleted group pts. 9,614
17. Natural Abilities 9 pts. 9,612
18. Deleted group pts. 9,605
19. FoldIt@Netherlands 6 pts. 9,597
20. Richard Dawkins Foundation 5 pts. 9,594

61. O Seki To Lv 1 51 pts. 9,761
62. vertex Lv 1 50 pts. 9,756
63. JayD7217 Lv 1 50 pts. 9,753
64. nemo7731 Lv 1 49 pts. 9,751
65. malthreSC Lv 1 49 pts. 9,750
66. Flagg65a Lv 1 48 pts. 9,749
67. B_2 Lv 1 48 pts. 9,748
68. infjamc Lv 1 47 pts. 9,745
69. SKSbell Lv 1 46 pts. 9,743
70. weitzen Lv 1 46 pts. 9,740

Comments

beta_helix Staff Lv 1

January 30, 2012

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 64 is predicted to be part of a sheet or loop. However, the Valine at residue 81 is predicted to be anything.