Foldit

508: CASP ROLL Target R0005

Closed since about 14 years ago

Intermediate Overall Prediction

Summary

Created: January 30, 2012
Expires: February 06, 2012 at 19:00 UTC
Max points: 100

Description

The fifth CASP ROLL target, R0005, is due in 2 weeks so we are skipping the freestyle puzzle and providing you with server predictions. Luckily this is not a big protein and the Alignment Tool has an extended chain that you can work with (if you don't want to be influenced by the server predictions). Resetting the puzzle will cycle through 10 different server predictions. They are also available in the Alignment Tool so you can use partial threading. The secondary structure prediction are posted in the puzzle comments.

Top groups

31. Foldit UK 1 pt. 9,198
32. Valencia 1 pt. 9,137
33. Skeptics Guide to the Universe 1 pt. 9,106
34. Deleted group pts. 9,017
35. CHNO Junkies 1 pt. 8,928
36. DSN @ Home 1 pt. 8,859
37. Crunching Family 1 pt. 8,806
38. Hellenic Group 1 pt. 8,749
39. Czech National Team 1 pt. 8,727
40. Deleted group pts. 8,607

111. barbaranne Lv 1 27 pts. 9,647
112. pfeiffelfloyd Lv 1 27 pts. 9,645
113. SimplySue Lv 1 26 pts. 9,644
114. micheldeweerd Lv 1 26 pts. 9,644
115. froggs554 Lv 1 26 pts. 9,640
116. Deleted player pts. 9,640
117. Deleted player pts. 9,639
118. Mark- Lv 1 24 pts. 9,637
119. randomlil Lv 1 24 pts. 9,636
120. Auntiesocial Lv 1 24 pts. 9,635

Comments

beta_helix Staff Lv 1

January 30, 2012

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 64 is predicted to be part of a sheet or loop. However, the Valine at residue 81 is predicted to be anything.