Placeholder image of a protein
Icon representing a puzzle

511: CASP ROLL Target R0006

Closed since about 14 years ago

Advanced Overall Prediction

Summary

Created
February 06, 2012
Expires
Max points
100
Description

The sixth CASP ROLL target, R0006, is unfortunately another big protein. It is due in less than 3 weeks so again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 12,394
  2. Avatar for Void Crushers 2. Void Crushers 88 pts. 12,337
  3. Avatar for Go Science 3. Go Science 77 pts. 12,321
  4. Avatar for Androids 4. Androids 68 pts. 12,290
  5. Avatar for Anthropic Dreams 5. Anthropic Dreams 59 pts. 12,246
  6. Avatar for foldeRNA 6. foldeRNA 51 pts. 12,235
  7. Avatar for L'Alliance Francophone 7. L'Alliance Francophone 44 pts. 12,096
  8. Avatar for xkcd 8. xkcd 38 pts. 12,019
  9. Avatar for FoldIt@Netherlands 9. FoldIt@Netherlands 32 pts. 11,965
  10. Avatar for A970 10. A970 27 pts. 11,887
  1. Avatar for heather-1 111. heather-1 Lv 1 30 pts. 11,322
  2. Avatar for vertex 112. vertex Lv 1 30 pts. 11,295
  3. Avatar for barbaranne 113. barbaranne Lv 1 29 pts. 11,291
  4. Avatar for keithv 114. keithv Lv 1 29 pts. 11,289
  5. Avatar for motu 115. motu Lv 1 29 pts. 11,286
  6. Avatar for chaos2 116. chaos2 Lv 1 28 pts. 11,279
  7. Avatar for Susanne 117. Susanne Lv 1 28 pts. 11,274
  8. Avatar for bcd 118. bcd Lv 1 28 pts. 11,272
  9. Avatar for TimothyPatrick 119. TimothyPatrick Lv 1 27 pts. 11,241
  10. Avatar for BackupElk 120. BackupElk Lv 1 27 pts. 11,226

Comments

beta_helix Staff Lv 1

This puzzle is worth 150 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 9 is predicted to be part of a helix. However, the Valine at residue 69 is predicted to be part of a sheet.