Placeholder image of a protein
Icon representing a puzzle

515: CASP ROLL Target R0007

Closed since about 14 years ago

Advanced Overall Prediction

Summary

Created
February 15, 2012
Expires
Max points
100
Description

The seventh CASP ROLL target, R0007, is due in less than 3 weeks so again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.

Top groups

  1. Avatar for HMT heritage 11. HMT heritage 24 pts. 11,205
  2. Avatar for Deleted group 12. Deleted group pts. 11,000
  3. Avatar for chillerdown 13. chillerdown 17 pts. 10,988
  4. Avatar for SETI.Germany 14. SETI.Germany 15 pts. 10,889
  5. Avatar for Mojo Risin' 15. Mojo Risin' 12 pts. 10,874
  6. Avatar for Gargleblasters 16. Gargleblasters 10 pts. 10,826
  7. Avatar for xkcd 17. xkcd 8 pts. 10,817
  8. Avatar for Nerdfighters 18. Nerdfighters 7 pts. 10,798
  9. Avatar for Deleted group 19. Deleted group pts. 10,758
  10. Avatar for Piratenpartei Deutschland 20. Piratenpartei Deutschland 4 pts. 10,752
  1. Avatar for Bletchley Park
    1. Bletchley Park Lv 1
    100 pts. 11,655
  2. Avatar for dembones 2. dembones Lv 1 88 pts. 11,638
  3. Avatar for mimi 3. mimi Lv 1 77 pts. 11,608
  4. Avatar for martinzblavy 4. martinzblavy Lv 1 68 pts. 11,595
  5. Avatar for karstenw 5. karstenw Lv 1 59 pts. 11,557
  6. Avatar for Deleted player 6. Deleted player pts. 11,556
  7. Avatar for lamoille 7. lamoille Lv 1 44 pts. 11,554
  8. Avatar for barbaranne 8. barbaranne Lv 1 38 pts. 11,554
  9. Avatar for alwen 9. alwen Lv 1 32 pts. 11,543
  10. Avatar for PRL 10. PRL Lv 1 27 pts. 11,543

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 91 is predicted to be part of a helix. However, the Valines at residues 46 & 154 are predicted to be anything.