Placeholder image of a protein
Icon representing a puzzle

515: CASP ROLL Target R0007

Closed since about 14 years ago

Advanced Overall Prediction

Summary

Created
February 15, 2012
Expires
Max points
100
Description

The seventh CASP ROLL target, R0007, is due in less than 3 weeks so again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 11,663
  2. Avatar for Anthropic Dreams 2. Anthropic Dreams 89 pts. 11,557
  3. Avatar for L'Alliance Francophone 3. L'Alliance Francophone 78 pts. 11,526
  4. Avatar for Androids 4. Androids 68 pts. 11,487
  5. Avatar for Go Science 5. Go Science 60 pts. 11,476
  6. Avatar for Void Crushers 6. Void Crushers 52 pts. 11,421
  7. Avatar for foldeRNA 7. foldeRNA 45 pts. 11,405
  8. Avatar for A970 8. A970 39 pts. 11,322
  9. Avatar for FoldIt@Netherlands 9. FoldIt@Netherlands 33 pts. 11,303
  10. Avatar for Freedom Folders 10. Freedom Folders 28 pts. 11,272
  1. Avatar for Ladenhorcher 291. Ladenhorcher Lv 1 1 pt. 9,802
  2. Avatar for Anex 292. Anex Lv 1 1 pt. 9,782
  3. Avatar for MaWe25 293. MaWe25 Lv 1 1 pt. 9,778
  4. Avatar for deeperman 294. deeperman Lv 1 1 pt. 9,762
  5. Avatar for eltipopancho 295. eltipopancho Lv 1 1 pt. 9,752
  6. Avatar for geekyromantichybrid 296. geekyromantichybrid Lv 1 1 pt. 9,752
  7. Avatar for EugeneTwo 297. EugeneTwo Lv 1 1 pt. 9,730
  8. Avatar for lijianping 298. lijianping Lv 1 1 pt. 9,727
  9. Avatar for DC1600 299. DC1600 Lv 1 1 pt. 9,695
  10. Avatar for SIW 300. SIW Lv 1 1 pt. 9,685

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 91 is predicted to be part of a helix. However, the Valines at residues 46 & 154 are predicted to be anything.