517: CASP ROLL Target R0008

Closed since about 14 years ago

Summary

• Created: February 16, 2012
• Expires: February 22, 2012 at 21:00 UTC
• Max points: 100

Description

CASP ROLL target R0008 is due in 3 weeks so we are starting you off with server predictions. Luckily, these server predictions are very similar to one another. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments.

Top groups

• 21. Eὕρηκα! Heureka! 3 pts. 10,290
• 22. Deleted group pts. 10,267
• 23. Deleted group pts. 9,999
• 24. Russian team 1 pt. 9,982
• 25. Deleted group pts. 9,841
• 26. Dutch Power Cows 1 pt. 9,807
• 27. Team China 1 pt. 9,797
• 28. Valencia 1 pt. 9,791
• 29. Team Toombs 1 pt. 9,788
• 30. CHNO Junkies 1 pt. 9,673

Top evolvers

• 1. pauldunn 100 pts. 10,982
• 2. smilingone 90 pts. 10,979
• 3. HYLEE 80 pts. 10,979
• 4. meatexplosion 71 pts. 10,976
• 5. karstenw 63 pts. 10,976
• 6. barbaranne 56 pts. 10,975
• 7. bareego 49 pts. 10,975
• 8. phi16 43 pts. 10,974
• 9. jamiexq 38 pts. 10,974
• 10. lamoille 33 pts. 10,974

Comments

[beta_helix]

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 118 is predicted to be part of a sheet. However, the Valine at residue 16 is barely predicted to be in a helix.