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517: CASP ROLL Target R0008

Closed since about 14 years ago

Intermediate Overall Prediction

Summary

Created: February 16, 2012
Expires: February 22, 2012 at 21:00 UTC
Max points: 100

Description

CASP ROLL target R0008 is due in 3 weeks so we are starting you off with server predictions. Luckily, these server predictions are very similar to one another. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments.

Top groups

1. Go Science
100 pts. 10,982
2. Anthropic Dreams 88 pts. 10,976
3. Void Crushers 76 pts. 10,919
4. Contenders 66 pts. 10,897
5. L'Alliance Francophone 57 pts. 10,888
6. A970 49 pts. 10,866
7. Needles and Pins 42 pts. 10,864
8. Androids 36 pts. 10,854
9. foldeRNA 30 pts. 10,791
10. xkcd 25 pts. 10,657

31. spmm Lv 1 1 pt. 10,803
32. kastberg Lv 1 1 pt. 10,800
33. bertro Lv 1 1 pt. 10,791
34. JasperD Lv 1 1 pt. 10,789
35. itskimo Lv 1 1 pt. 10,714
36. Deleted player pts. 10,714
37. micheldeweerd Lv 1 1 pt. 10,607
38. Deleted player pts. 10,599
39. Ribo-soma Lv 1 1 pt. 10,513
40. Jean-Bob Lv 1 1 pt. 10,482

Comments

beta_helix Staff Lv 1

February 16, 2012

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 118 is predicted to be part of a sheet. However, the Valine at residue 16 is barely predicted to be in a helix.