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519: CASP ROLL Target R0009

Closed since about 14 years ago

Advanced Overall Prediction

Summary

Created
February 21, 2012
Expires
Max points
100
Description

The ninth CASP ROLL target, R0009, is unfortunately another big protein and again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.

Top groups

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  10. Avatar for Team Commonwealth 30. Team Commonwealth 1 pt. 9,718
  1. Avatar for kranky85 251. kranky85 Lv 1 1 pt. 9,512
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  3. Avatar for Orthius 253. Orthius Lv 1 1 pt. 9,472
  4. Avatar for Brewster 254. Brewster Lv 1 1 pt. 9,464
  5. Avatar for multaq 255. multaq Lv 1 1 pt. 9,462
  6. Avatar for Squirrely 256. Squirrely Lv 1 1 pt. 9,462
  7. Avatar for MEFreed 257. MEFreed Lv 1 1 pt. 9,451
  8. Avatar for Cerzax 258. Cerzax Lv 1 1 pt. 9,451
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  10. Avatar for zuudoo 260. zuudoo Lv 1 1 pt. 9,445

Comments

beta_helix Staff Lv 1

This puzzle is worth 150 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 103 is highly predicted to be part of a sheet. However, the Valine at residue 169 is predicted to be anything.