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519: CASP ROLL Target R0009

Closed since about 14 years ago

Advanced Overall Prediction

Summary

Created
February 21, 2012
Expires
Max points
100
Description

The ninth CASP ROLL target, R0009, is unfortunately another big protein and again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.

Top groups

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  10. Avatar for Team Commonwealth 30. Team Commonwealth 1 pt. 9,718
  1. Avatar for ch00215 331. ch00215 Lv 1 1 pt. 8,283
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  3. Avatar for BrandonLee 333. BrandonLee Lv 1 1 pt. 8,145
  4. Avatar for theradzik 334. theradzik Lv 1 1 pt. 8,129
  5. Avatar for Copperfield 335. Copperfield Lv 1 1 pt. 8,119
  6. Avatar for Henu989 336. Henu989 Lv 1 1 pt. 8,115
  7. Avatar for oaks 337. oaks Lv 1 1 pt. 8,090
  8. Avatar for RiskyHawkEye 338. RiskyHawkEye Lv 1 1 pt. 8,065
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  10. Avatar for FreddyChang13 340. FreddyChang13 Lv 1 1 pt. 7,981

Comments

beta_helix Staff Lv 1

This puzzle is worth 150 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 103 is highly predicted to be part of a sheet. However, the Valine at residue 169 is predicted to be anything.