Placeholder image of a protein
Icon representing a puzzle

519: CASP ROLL Target R0009

Closed since about 14 years ago

Advanced Overall Prediction

Summary

Created
February 21, 2012
Expires
Max points
100
Description

The ninth CASP ROLL target, R0009, is unfortunately another big protein and again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.

Top groups

  1. Avatar for Crunching Family 31. Crunching Family 1 pt. 9,707
  2. Avatar for Deleted group 32. Deleted group pts. 9,525
  3. Avatar for Team China 33. Team China 1 pt. 9,277
  4. Avatar for BOINC@Poland 34. BOINC@Poland 1 pt. 9,145
  5. Avatar for Valencia 35. Valencia 1 pt. 9,143
  6. Avatar for Team Toombs 36. Team Toombs 1 pt. 9,071
  7. Avatar for Geekdo 37. Geekdo 1 pt. 8,612
  8. Avatar for Biology-1st 38. Biology-1st 1 pt. 6,011
  9. Avatar for Mmm Helix Fries. 39. Mmm Helix Fries. 1 pt. 0
  10. Avatar for Deleted group 40. Deleted group pts. 0
  1. Avatar for telesphore4 111. telesphore4 Lv 1 20 pts. 11,148
  2. Avatar for Andi1960 112. Andi1960 Lv 1 20 pts. 11,107
  3. Avatar for Greg60 113. Greg60 Lv 1 20 pts. 11,100
  4. Avatar for fishercat 114. fishercat Lv 1 19 pts. 11,096
  5. Avatar for frood66 115. frood66 Lv 1 19 pts. 11,091
  6. Avatar for Hyacinth04 116. Hyacinth04 Lv 1 19 pts. 11,072
  7. Avatar for alex.wveit 117. alex.wveit Lv 1 18 pts. 11,071
  8. Avatar for Jajaboman 118. Jajaboman Lv 1 18 pts. 11,066
  9. Avatar for bamh 119. bamh Lv 1 18 pts. 11,056
  10. Avatar for SKSbell 120. SKSbell Lv 1 17 pts. 11,051

Comments

beta_helix Staff Lv 1

This puzzle is worth 150 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 103 is highly predicted to be part of a sheet. However, the Valine at residue 169 is predicted to be anything.