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519: CASP ROLL Target R0009

Closed since about 14 years ago

Advanced Overall Prediction

Summary

Created: February 21, 2012
Expires: March 03, 2012 at 15:00 UTC
Max points: 100

Description

The ninth CASP ROLL target, R0009, is unfortunately another big protein and again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.

Top groups

31. Crunching Family 1 pt. 9,707
32. Deleted group pts. 9,525
33. Team China 1 pt. 9,277
34. BOINC@Poland 1 pt. 9,145
35. Valencia 1 pt. 9,143
36. Team Toombs 1 pt. 9,071
37. Geekdo 1 pt. 8,612
38. Biology-1st 1 pt. 6,011
39. Mmm Helix Fries. 1 pt. 0
40. Deleted group pts. 0

231. steveB Lv 1 2 pts. 9,742
232. ErichVonSterich Lv 1 2 pts. 9,732
233. momadoc Lv 1 2 pts. 9,723
234. Canada_David Lv 1 2 pts. 9,718
235. birdy_ssr Lv 1 2 pts. 9,713
236. leprechaun Lv 1 2 pts. 9,707
237. darioarena Lv 1 2 pts. 9,705
238. steamywindow Lv 1 2 pts. 9,692
239. nmos1056 Lv 1 2 pts. 9,681
240. Kaanan Lv 1 1 pt. 9,656

Comments

beta_helix Staff Lv 1

February 21, 2012

This puzzle is worth 150 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 103 is highly predicted to be part of a sheet. However, the Valine at residue 169 is predicted to be anything.