Placeholder image of a protein
Icon representing a puzzle

519: CASP ROLL Target R0009

Closed since about 14 years ago

Advanced Overall Prediction

Summary

Created
February 21, 2012
Expires
Max points
100
Description

The ninth CASP ROLL target, R0009, is unfortunately another big protein and again we are starting you off with server predictions. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. The secondary structure predictions are posted in the puzzle comments. If you have trouble loading this puzzle, try checking the box "disable network timeouts" when you login.

Top groups

  1. Avatar for Crunching Family 31. Crunching Family 1 pt. 9,707
  2. Avatar for Deleted group 32. Deleted group pts. 9,525
  3. Avatar for Team China 33. Team China 1 pt. 9,277
  4. Avatar for BOINC@Poland 34. BOINC@Poland 1 pt. 9,145
  5. Avatar for Valencia 35. Valencia 1 pt. 9,143
  6. Avatar for Team Toombs 36. Team Toombs 1 pt. 9,071
  7. Avatar for Geekdo 37. Geekdo 1 pt. 8,612
  8. Avatar for Biology-1st 38. Biology-1st 1 pt. 6,011
  9. Avatar for Mmm Helix Fries. 39. Mmm Helix Fries. 1 pt. 0
  10. Avatar for Deleted group 40. Deleted group pts. 0
  1. Avatar for AIDA64 291. AIDA64 Lv 1 1 pt. 9,070
  2. Avatar for groupE 292. groupE Lv 1 1 pt. 9,035
  3. Avatar for Arne Heessels 293. Arne Heessels Lv 1 1 pt. 9,026
  4. Avatar for wildwind2000 294. wildwind2000 Lv 1 1 pt. 8,997
  5. Avatar for Ladenhorcher 295. Ladenhorcher Lv 1 1 pt. 8,971
  6. Avatar for yoshiyuki0627 296. yoshiyuki0627 Lv 1 1 pt. 8,960
  7. Avatar for biomisha 297. biomisha Lv 1 1 pt. 8,960
  8. Avatar for Fowardint 298. Fowardint Lv 1 1 pt. 8,919
  9. Avatar for armadillo314 299. armadillo314 Lv 1 1 pt. 8,876
  10. Avatar for emeraldragon17 300. emeraldragon17 Lv 1 1 pt. 8,836

Comments

beta_helix Staff Lv 1

This puzzle is worth 150 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 103 is highly predicted to be part of a sheet. However, the Valine at residue 169 is predicted to be anything.