Placeholder image of a protein
Icon representing a puzzle

526: CASP ROLL Target R0011

Closed since about 14 years ago

Intermediate Overall Prediction

Summary

Created
March 07, 2012
Expires
Max points
100
Description

We are starting you off with server predictions for CASP ROLL target R0011. Luckily, this is a shorter target: only 81 residues. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. As requested in the Scientist Chat, this puzzle will be up for 10 days. So please work on each server model, not just the one that gets you the most points initially! The secondary structure predictions are posted in the puzzle comments.

Top groups

  1. Avatar for A970 11. A970 24 pts. 9,760
  2. Avatar for Russian team 12. Russian team 21 pts. 9,752
  3. Avatar for xkcd 13. xkcd 17 pts. 9,733
  4. Avatar for Gargleblasters 14. Gargleblasters 15 pts. 9,726
  5. Avatar for Freedom Folders 15. Freedom Folders 12 pts. 9,706
  6. Avatar for Deleted group 16. Deleted group pts. 9,682
  7. Avatar for Richard Dawkins Foundation 17. Richard Dawkins Foundation 8 pts. 9,678
  8. Avatar for Mojo Risin' 18. Mojo Risin' 7 pts. 9,661
  9. Avatar for FoldIt@Netherlands 19. FoldIt@Netherlands 6 pts. 9,652
  10. Avatar for Deleted group 20. Deleted group pts. 9,640
  1. Avatar for Ujelet 131. Ujelet Lv 1 18 pts. 9,616
  2. Avatar for drjr 132. drjr Lv 1 17 pts. 9,609
  3. Avatar for ZiiONIC 133. ZiiONIC Lv 1 17 pts. 9,605
  4. Avatar for Jean-Bob 134. Jean-Bob Lv 1 17 pts. 9,603
  5. Avatar for Mike Cassidy 135. Mike Cassidy Lv 1 17 pts. 9,603
  6. Avatar for caglar 136. caglar Lv 1 16 pts. 9,588
  7. Avatar for pfeiffelfloyd 137. pfeiffelfloyd Lv 1 16 pts. 9,587
  8. Avatar for Wildcat777 138. Wildcat777 Lv 1 16 pts. 9,585
  9. Avatar for TheGUmmer 139. TheGUmmer Lv 1 16 pts. 9,577
  10. Avatar for Deleted player 140. Deleted player pts. 9,575

Comments

beta_helix Staff Lv 1

This puzzle is worth 130 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 4, 44, & 45 are highly predicted to be part of a sheet. However, the Valine at residue 9 is predicted to be anything.