Placeholder image of a protein
Icon representing a puzzle

526: CASP ROLL Target R0011

Closed since about 14 years ago

Intermediate Overall Prediction

Summary

Created
March 07, 2012
Expires
Max points
100
Description

We are starting you off with server predictions for CASP ROLL target R0011. Luckily, this is a shorter target: only 81 residues. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. As requested in the Scientist Chat, this puzzle will be up for 10 days. So please work on each server model, not just the one that gets you the most points initially! The secondary structure predictions are posted in the puzzle comments.

Top groups

  1. Avatar for Deleted group 21. Deleted group pts. 9,575
  2. Avatar for putting the eat in meat 22. putting the eat in meat 3 pts. 9,560
  3. Avatar for BOINC@Poland 23. BOINC@Poland 2 pts. 9,523
  4. Avatar for Natural Abilities 24. Natural Abilities 2 pts. 9,501
  5. Avatar for Eὕρηκα! Heureka! 25. Eὕρηκα! Heureka! 2 pts. 9,495
  6. Avatar for Piratenpartei Deutschland 26. Piratenpartei Deutschland 1 pt. 9,495
  7. Avatar for Nerdfighters 27. Nerdfighters 1 pt. 9,486
  8. Avatar for Team Germany 28. Team Germany 1 pt. 9,483
  9. Avatar for Deleted group 29. Deleted group pts. 9,311
  10. Avatar for Boinc.be 30. Boinc.be 1 pt. 9,249
  1. Avatar for Mark- 161. Mark- Lv 1 11 pts. 9,527
  2. Avatar for keithv 162. keithv Lv 1 11 pts. 9,524
  3. Avatar for kitek314_pl 163. kitek314_pl Lv 1 10 pts. 9,523
  4. Avatar for frostschutz 164. frostschutz Lv 1 10 pts. 9,518
  5. Avatar for itskimo 165. itskimo Lv 1 10 pts. 9,515
  6. Avatar for vertex 166. vertex Lv 1 10 pts. 9,511
  7. Avatar for alex.wveit 167. alex.wveit Lv 1 10 pts. 9,506
  8. Avatar for sbea3 168. sbea3 Lv 1 10 pts. 9,504
  9. Avatar for Larry Pierce 169. Larry Pierce Lv 1 9 pts. 9,503
  10. Avatar for Mr_Jolty 170. Mr_Jolty Lv 1 9 pts. 9,501

Comments

beta_helix Staff Lv 1

This puzzle is worth 130 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 4, 44, & 45 are highly predicted to be part of a sheet. However, the Valine at residue 9 is predicted to be anything.