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526: CASP ROLL Target R0011

Closed since about 14 years ago

Intermediate Overall Prediction

Summary

Created
March 07, 2012
Expires
Max points
100
Description

We are starting you off with server predictions for CASP ROLL target R0011. Luckily, this is a shorter target: only 81 residues. Resetting the puzzle will cycle through 10 different server predictions that are also available in the Alignment Tool so you can use partial threading. As requested in the Scientist Chat, this puzzle will be up for 10 days. So please work on each server model, not just the one that gets you the most points initially! The secondary structure predictions are posted in the puzzle comments.

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Comments

beta_helix Staff Lv 1

This puzzle is worth 130 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 4, 44, & 45 are highly predicted to be part of a sheet. However, the Valine at residue 9 is predicted to be anything.