Placeholder image of a protein
Icon representing a puzzle

527: CASP ROLL Target R0013

Closed since almost 14 years ago

Intermediate Overall Prediction

Summary

Created
March 10, 2012
Expires
Max points
100
Description

We are starting you off with server predictions for CASP ROLL target R0013. Resetting the puzzle will cycle through 9 different server predictions that are also available in the Alignment Tool so you can use partial threading. As requested in the Scientist Chat, this puzzle will be up for 10 days. So please work on each server model, not just the one that gets you the most points initially! The secondary structure predictions are posted in the puzzle comments.

Top groups

  1. Avatar for Richard Dawkins Foundation 11. Richard Dawkins Foundation 16 pts. 10,895
  2. Avatar for Team Germany 12. Team Germany 13 pts. 10,876
  3. Avatar for FoldIt@Netherlands 13. FoldIt@Netherlands 10 pts. 10,812
  4. Avatar for Gargleblasters 14. Gargleblasters 8 pts. 10,786
  5. Avatar for Freedom Folders 15. Freedom Folders 6 pts. 10,676
  6. Avatar for putting the eat in meat 16. putting the eat in meat 5 pts. 10,658
  7. Avatar for Needles and Pins 17. Needles and Pins 4 pts. 10,594
  8. Avatar for Russian team 18. Russian team 3 pts. 10,546
  9. Avatar for Natural Abilities 19. Natural Abilities 2 pts. 10,501
  10. Avatar for xkcd 20. xkcd 2 pts. 10,476
  1. Avatar for doug.ehlert 11. doug.ehlert Lv 1 88 pts. 11,108
  2. Avatar for enszyme 12. enszyme Lv 1 87 pts. 11,100
  3. Avatar for Ch Garnier 13. Ch Garnier Lv 1 86 pts. 11,089
  4. Avatar for spvincent 14. spvincent Lv 1 85 pts. 11,087
  5. Avatar for johnmitch 15. johnmitch Lv 1 83 pts. 11,085
  6. Avatar for Mark- 16. Mark- Lv 1 82 pts. 11,073
  7. Avatar for spdenne 17. spdenne Lv 1 81 pts. 11,063
  8. Avatar for tokens 18. tokens Lv 1 80 pts. 11,063
  9. Avatar for mat747 19. mat747 Lv 1 79 pts. 11,020
  10. Avatar for Timo van der Laan 20. Timo van der Laan Lv 1 78 pts. 11,019

Comments

beta_helix Staff Lv 1

This puzzle is worth 130 global points!
As requested in the Scientist Chat (http://fold.it/portal/node/991963#t14:07) I have filtered out server models that were very similar to one another (in this case Quark4 and Zhang1 were similar) so you have one less model to focus on!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 45 & 46 are highly predicted to be part of a sheet. However, the Valines at residue 31 & 98 are predicted to be anything.