Placeholder image of a protein
Icon representing a puzzle

527: CASP ROLL Target R0013

Closed since almost 14 years ago

Intermediate Overall Prediction

Summary

Created
March 10, 2012
Expires
Max points
100
Description

We are starting you off with server predictions for CASP ROLL target R0013. Resetting the puzzle will cycle through 9 different server predictions that are also available in the Alignment Tool so you can use partial threading. As requested in the Scientist Chat, this puzzle will be up for 10 days. So please work on each server model, not just the one that gets you the most points initially! The secondary structure predictions are posted in the puzzle comments.

Top groups

  1. Avatar for L'Alliance Francophone
    1. L'Alliance Francophone
    100 pts. 11,323
  2. Avatar for Anthropic Dreams 2. Anthropic Dreams 86 pts. 11,254
  3. Avatar for Contenders 3. Contenders 73 pts. 11,242
  4. Avatar for Go Science 4. Go Science 62 pts. 11,232
  5. Avatar for Void Crushers 5. Void Crushers 52 pts. 11,139
  6. Avatar for HMT heritage 6. HMT heritage 43 pts. 11,015
  7. Avatar for SETI.Germany 7. SETI.Germany 36 pts. 10,993
  8. Avatar for foldeRNA 8. foldeRNA 30 pts. 10,972
  9. Avatar for Androids 9. Androids 24 pts. 10,956
  10. Avatar for A970 10. A970 20 pts. 10,940
  1. Avatar for Grom 121. Grom Lv 1 16 pts. 10,546
  2. Avatar for Deleted player 122. Deleted player pts. 10,537
  3. Avatar for infjamc 123. infjamc Lv 1 15 pts. 10,536
  4. Avatar for harvardman 124. harvardman Lv 1 15 pts. 10,528
  5. Avatar for anthion 125. anthion Lv 1 14 pts. 10,527
  6. Avatar for westrel3 126. westrel3 Lv 1 14 pts. 10,515
  7. Avatar for twisted1 127. twisted1 Lv 1 14 pts. 10,514
  8. Avatar for Mr_Jolty 128. Mr_Jolty Lv 1 14 pts. 10,501
  9. Avatar for larry25427 129. larry25427 Lv 1 13 pts. 10,486
  10. Avatar for mitarcher 130. mitarcher Lv 1 13 pts. 10,477

Comments

beta_helix Staff Lv 1

This puzzle is worth 130 global points!
As requested in the Scientist Chat (http://fold.it/portal/node/991963#t14:07) I have filtered out server models that were very similar to one another (in this case Quark4 and Zhang1 were similar) so you have one less model to focus on!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 45 & 46 are highly predicted to be part of a sheet. However, the Valines at residue 31 & 98 are predicted to be anything.