Placeholder image of a protein
Icon representing a puzzle

552: CASP10 Target T0644

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
May 01, 2012
Expires
Max points
100
Description

Here is the first CASP10 target. This target is 166 residues and we are giving you the top-predicted template from 3 different alignment programs (you'll notice that all 3 programs picked the same template, but slightly different alignments). More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for FoldIt@Netherlands 11. FoldIt@Netherlands 16 pts. 11,447
  2. Avatar for Nerdfighters 12. Nerdfighters 13 pts. 11,384
  3. Avatar for HMT heritage 13. HMT heritage 10 pts. 11,296
  4. Avatar for Mojo Risin' 14. Mojo Risin' 8 pts. 11,174
  5. Avatar for Androids 15. Androids 6 pts. 11,011
  6. Avatar for Freedom Folders 16. Freedom Folders 5 pts. 10,671
  7. Avatar for Atlanta 17. Atlanta 4 pts. 10,493
  8. Avatar for CHNO Junkies 18. CHNO Junkies 3 pts. 10,470
  9. Avatar for Deleted group 19. Deleted group pts. 10,461
  10. Avatar for Richard Dawkins Foundation 20. Richard Dawkins Foundation 2 pts. 10,388
  1. Avatar for johngran 281. johngran Lv 1 1 pt. 7,167
  2. Avatar for jateixeira.2009 282. jateixeira.2009 Lv 1 1 pt. 7,167
  3. Avatar for AIDA64 283. AIDA64 Lv 1 1 pt. 7,167
  4. Avatar for Cloud2512 284. Cloud2512 Lv 1 1 pt. 7,167
  5. Avatar for Oller125 285. Oller125 Lv 1 1 pt. 7,167
  6. Avatar for Abongo 286. Abongo Lv 1 1 pt. 7,167
  7. Avatar for zhangwh 287. zhangwh Lv 1 1 pt. 7,167
  8. Avatar for richard c 288. richard c Lv 1 1 pt. 7,167
  9. Avatar for lllkjok 289. lllkjok Lv 1 1 pt. 7,166
  10. Avatar for umhe36 290. umhe36 Lv 1 1 pt. 7,166

Comments

beta_helix Staff Lv 1

Here are some other secondary structure predictions (that are sadly not as easy to look at):

H = helix
E = sheet
C = loop (or coil)

The higher the number at the top of each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanines at residue 19 & 21 are highly predicted to be part of a helix (an H with a 9 & 8 above it). However, the Phenylalanine at residue 77 is predicted to be in a sheet (an E with a 9 above it).

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 12, 16, 18 & 99 are highly predicted to be part of a helix. However, the Valines at residues 62, 74, 130-131 & 139 are highly predicted to be in sheets.