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552: CASP10 Target T0644

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
May 01, 2012
Expires
Max points
100
Description

Here is the first CASP10 target. This target is 166 residues and we are giving you the top-predicted template from 3 different alignment programs (you'll notice that all 3 programs picked the same template, but slightly different alignments). More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Eὕρηκα! Heureka! 21. Eὕρηκα! Heureka! 1 pt. 10,249
  2. Avatar for 'Merica! 22. 'Merica! 1 pt. 10,195
  3. Avatar for Piratenpartei Deutschland 23. Piratenpartei Deutschland 1 pt. 10,150
  4. Avatar for xkcd 24. xkcd 1 pt. 10,097
  5. Avatar for Team China 25. Team China 1 pt. 9,591
  6. Avatar for Deleted group 26. Deleted group pts. 9,128
  7. Avatar for Minions of TWIS 27. Minions of TWIS 1 pt. 8,881
  8. Avatar for Geekdo 28. Geekdo 1 pt. 8,152
  9. Avatar for Team Germany 29. Team Germany 1 pt. 8,064
  10. Avatar for Team Toombs 30. Team Toombs 1 pt. 7,166
  1. Avatar for Aubade00 101. Aubade00 Lv 1 19 pts. 11,114
  2. Avatar for RLDallas55 102. RLDallas55 Lv 1 19 pts. 11,107
  3. Avatar for Incongruous 103. Incongruous Lv 1 18 pts. 11,106
  4. Avatar for bendbob 104. bendbob Lv 1 18 pts. 11,095
  5. Avatar for alwen 105. alwen Lv 1 17 pts. 11,089
  6. Avatar for christioanchauvin 106. christioanchauvin Lv 1 17 pts. 11,073
  7. Avatar for B_2 107. B_2 Lv 1 17 pts. 11,047
  8. Avatar for bertro 108. bertro Lv 1 16 pts. 11,031
  9. Avatar for Deleted player 109. Deleted player pts. 11,013
  10. Avatar for wudoo 110. wudoo Lv 1 16 pts. 11,011

Comments

beta_helix Staff Lv 1

Here are some other secondary structure predictions (that are sadly not as easy to look at):

H = helix
E = sheet
C = loop (or coil)

The higher the number at the top of each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanines at residue 19 & 21 are highly predicted to be part of a helix (an H with a 9 & 8 above it). However, the Phenylalanine at residue 77 is predicted to be in a sheet (an E with a 9 above it).

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 12, 16, 18 & 99 are highly predicted to be part of a helix. However, the Valines at residues 62, 74, 130-131 & 139 are highly predicted to be in sheets.