Placeholder image of a protein
Icon representing a puzzle

552: CASP10 Target T0644

Closed since almost 14 years ago

Advanced Advanced Overall Overall Prediction Prediction

Summary

Created
May 01, 2012
Expires
Max points
100
Description

Here is the first CASP10 target. This target is 166 residues and we are giving you the top-predicted template from 3 different alignment programs (you'll notice that all 3 programs picked the same template, but slightly different alignments). More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Eὕρηκα! Heureka! 21. Eὕρηκα! Heureka! 1 pt. 10,249
  2. Avatar for 'Merica! 22. 'Merica! 1 pt. 10,195
  3. Avatar for Piratenpartei Deutschland 23. Piratenpartei Deutschland 1 pt. 10,150
  4. Avatar for xkcd 24. xkcd 1 pt. 10,097
  5. Avatar for Team China 25. Team China 1 pt. 9,591
  6. Avatar for Deleted group 26. Deleted group pts. 9,128
  7. Avatar for Minions of TWIS 27. Minions of TWIS 1 pt. 8,881
  8. Avatar for Geekdo 28. Geekdo 1 pt. 8,152
  9. Avatar for Team Germany 29. Team Germany 1 pt. 8,064
  10. Avatar for Team Toombs 30. Team Toombs 1 pt. 7,166
  1. Avatar for Kevonni 111. Kevonni Lv 1 15 pts. 10,969
  2. Avatar for ViJay7019 112. ViJay7019 Lv 1 15 pts. 10,954
  3. Avatar for anne romaine 113. anne romaine Lv 1 15 pts. 10,941
  4. Avatar for GreekCivilization 114. GreekCivilization Lv 1 15 pts. 10,920
  5. Avatar for packer 115. packer Lv 1 14 pts. 10,906
  6. Avatar for multaq 116. multaq Lv 1 14 pts. 10,879
  7. Avatar for weitzen 117. weitzen Lv 1 14 pts. 10,859
  8. Avatar for mbinfield 118. mbinfield Lv 1 13 pts. 10,855
  9. Avatar for hpaege 119. hpaege Lv 1 13 pts. 10,854
  10. Avatar for jobo0502 120. jobo0502 Lv 1 13 pts. 10,853

Comments

beta_helix Staff Lv 1

Here are some other secondary structure predictions (that are sadly not as easy to look at):

H = helix
E = sheet
C = loop (or coil)

The higher the number at the top of each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanines at residue 19 & 21 are highly predicted to be part of a helix (an H with a 9 & 8 above it). However, the Phenylalanine at residue 77 is predicted to be in a sheet (an E with a 9 above it).

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 12, 16, 18 & 99 are highly predicted to be part of a helix. However, the Valines at residues 62, 74, 130-131 & 139 are highly predicted to be in sheets.