Placeholder image of a protein
Icon representing a puzzle

552: CASP10 Target T0644

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
May 01, 2012
Expires
Max points
100
Description

Here is the first CASP10 target. This target is 166 residues and we are giving you the top-predicted template from 3 different alignment programs (you'll notice that all 3 programs picked the same template, but slightly different alignments). More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Eὕρηκα! Heureka! 21. Eὕρηκα! Heureka! 1 pt. 10,249
  2. Avatar for 'Merica! 22. 'Merica! 1 pt. 10,195
  3. Avatar for Piratenpartei Deutschland 23. Piratenpartei Deutschland 1 pt. 10,150
  4. Avatar for xkcd 24. xkcd 1 pt. 10,097
  5. Avatar for Team China 25. Team China 1 pt. 9,591
  6. Avatar for Deleted group 26. Deleted group pts. 9,128
  7. Avatar for Minions of TWIS 27. Minions of TWIS 1 pt. 8,881
  8. Avatar for Geekdo 28. Geekdo 1 pt. 8,152
  9. Avatar for Team Germany 29. Team Germany 1 pt. 8,064
  10. Avatar for Team Toombs 30. Team Toombs 1 pt. 7,166
  1. Avatar for darioarena 81. darioarena Lv 1 28 pts. 11,330
  2. Avatar for Mark A 82. Mark A Lv 1 27 pts. 11,326
  3. Avatar for gramps 83. gramps Lv 1 27 pts. 11,320
  4. Avatar for darrinfunk 84. darrinfunk Lv 1 26 pts. 11,291
  5. Avatar for O Seki To 85. O Seki To Lv 1 26 pts. 11,289
  6. Avatar for jermainiac 86. jermainiac Lv 1 25 pts. 11,282
  7. Avatar for Tony Origami 87. Tony Origami Lv 1 25 pts. 11,280
  8. Avatar for pvc78 88. pvc78 Lv 1 24 pts. 11,268
  9. Avatar for Galaxie 89. Galaxie Lv 1 24 pts. 11,266
  10. Avatar for Schleicher 90. Schleicher Lv 1 23 pts. 11,259

Comments

beta_helix Staff Lv 1

Here are some other secondary structure predictions (that are sadly not as easy to look at):

H = helix
E = sheet
C = loop (or coil)

The higher the number at the top of each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanines at residue 19 & 21 are highly predicted to be part of a helix (an H with a 9 & 8 above it). However, the Phenylalanine at residue 77 is predicted to be in a sheet (an E with a 9 above it).

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 12, 16, 18 & 99 are highly predicted to be part of a helix. However, the Valines at residues 62, 74, 130-131 & 139 are highly predicted to be in sheets.