Placeholder image of a protein
Icon representing a puzzle

552: CASP10 Target T0644

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
May 01, 2012
Expires
Max points
100
Description

Here is the first CASP10 target. This target is 166 residues and we are giving you the top-predicted template from 3 different alignment programs (you'll notice that all 3 programs picked the same template, but slightly different alignments). More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Brave New World 31. Brave New World 1 pt. 7,164
  2. Avatar for WSUstudents 32. WSUstudents 1 pt. 0
  3. Avatar for DSN @ Home 33. DSN @ Home 1 pt. 0
  1. Avatar for Sealunar 311. Sealunar Lv 1 1 pt. 7,158
  2. Avatar for hello2 312. hello2 Lv 1 1 pt. 7,145
  3. Avatar for tipz2k11 313. tipz2k11 Lv 1 1 pt. 7,105
  4. Avatar for Matt4337 314. Matt4337 Lv 1 1 pt. 7,056
  5. Avatar for cosmichorror 315. cosmichorror Lv 1 1 pt. 6,961
  6. Avatar for Mortality 316. Mortality Lv 1 1 pt. 6,950
  7. Avatar for ZeroLeak7 317. ZeroLeak7 Lv 1 1 pt. 6,931
  8. Avatar for born2d 318. born2d Lv 1 1 pt. 6,613
  9. Avatar for scottdyson 319. scottdyson Lv 1 1 pt. 6,553
  10. Avatar for ErichVonSterich 320. ErichVonSterich Lv 1 1 pt. 6,376

Comments

beta_helix Staff Lv 1

Here are some other secondary structure predictions (that are sadly not as easy to look at):

H = helix
E = sheet
C = loop (or coil)

The higher the number at the top of each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanines at residue 19 & 21 are highly predicted to be part of a helix (an H with a 9 & 8 above it). However, the Phenylalanine at residue 77 is predicted to be in a sheet (an E with a 9 above it).

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 12, 16, 18 & 99 are highly predicted to be part of a helix. However, the Valines at residues 62, 74, 130-131 & 139 are highly predicted to be in sheets.