Placeholder image of a protein
Icon representing a puzzle

558: CASP10 Target T0668

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
May 15, 2012
Expires
Max points
100
Description

Just to warn you: this one is going to be tough! None of the alignment programs were able to find good templates for this target, and it might be the case that this protein has no homologs. Therefore we are giving you 6 templates (in hope that one of them is correct) for now, and will provide you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Gargleblasters 11. Gargleblasters 16 pts. 9,784
  2. Avatar for Atlanta 12. Atlanta 13 pts. 9,735
  3. Avatar for Androids 13. Androids 10 pts. 9,634
  4. Avatar for SETI.Germany 14. SETI.Germany 8 pts. 9,613
  5. Avatar for Deleted group 15. Deleted group pts. 9,572
  6. Avatar for Freedom Folders 16. Freedom Folders 5 pts. 9,446
  7. Avatar for Eὕρηκα! Heureka! 17. Eὕρηκα! Heureka! 4 pts. 9,419
  8. Avatar for xkcd 18. xkcd 3 pts. 9,394
  9. Avatar for Geekdo 19. Geekdo 2 pts. 9,292
  10. Avatar for Russian team 20. Russian team 2 pts. 9,292
  1. Avatar for ErichVonSterich 151. ErichVonSterich Lv 1 6 pts. 9,362
  2. Avatar for SKSbell 152. SKSbell Lv 1 6 pts. 9,355
  3. Avatar for aendgraend 153. aendgraend Lv 1 6 pts. 9,354
  4. Avatar for tallguy-13088 154. tallguy-13088 Lv 1 6 pts. 9,353
  5. Avatar for LavenderSky 155. LavenderSky Lv 1 6 pts. 9,348
  6. Avatar for packer 156. packer Lv 1 6 pts. 9,346
  7. Avatar for lamoille 157. lamoille Lv 1 6 pts. 9,346
  8. Avatar for HRM Chatzibarbakarapapadopoulos 158. HRM Chatzibarbakarapapadopoulos Lv 1 5 pts. 9,319
  9. Avatar for kdieber 159. kdieber Lv 1 5 pts. 9,311
  10. Avatar for harvardman 160. harvardman Lv 1 5 pts. 9,310

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (which has the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=65

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 51 is highly predicted to be in a sheet. However, the Valine at residue 10 is not predicted to be anything.