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558: CASP10 Target T0668

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
May 15, 2012
Expires
Max points
100
Description

Just to warn you: this one is going to be tough! None of the alignment programs were able to find good templates for this target, and it might be the case that this protein has no homologs. Therefore we are giving you 6 templates (in hope that one of them is correct) for now, and will provide you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

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  1. Avatar for gmn
    1. gmn Lv 1
    100 pts. 10,036
  2. Avatar for mimi 2. mimi Lv 1 99 pts. 10,007
  3. Avatar for dembones 3. dembones Lv 1 98 pts. 9,998
  4. Avatar for ViJay7019 4. ViJay7019 Lv 1 96 pts. 9,997
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  7. Avatar for tokens 7. tokens Lv 1 92 pts. 9,983
  8. Avatar for spvincent 8. spvincent Lv 1 91 pts. 9,978
  9. Avatar for meatexplosion 9. meatexplosion Lv 1 90 pts. 9,965
  10. Avatar for Galaxie 10. Galaxie Lv 1 88 pts. 9,959

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (which has the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=65

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 51 is highly predicted to be in a sheet. However, the Valine at residue 10 is not predicted to be anything.