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558: CASP10 Target T0668

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
May 15, 2012
Expires
Max points
100
Description

Just to warn you: this one is going to be tough! None of the alignment programs were able to find good templates for this target, and it might be the case that this protein has no homologs. Therefore we are giving you 6 templates (in hope that one of them is correct) for now, and will provide you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

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    1. Anthropic Dreams
    100 pts. 10,037
  2. Avatar for Contenders 2. Contenders 86 pts. 10,007
  3. Avatar for FoldIt@Netherlands 3. FoldIt@Netherlands 73 pts. 9,997
  4. Avatar for Void Crushers 4. Void Crushers 62 pts. 9,988
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  6. Avatar for foldeRNA 6. foldeRNA 43 pts. 9,938
  7. Avatar for L'Alliance Francophone 7. L'Alliance Francophone 36 pts. 9,938
  8. Avatar for Richard Dawkins Foundation 8. Richard Dawkins Foundation 30 pts. 9,821
  9. Avatar for HMT heritage 9. HMT heritage 24 pts. 9,796
  10. Avatar for Deleted group 10. Deleted group pts. 9,792
  1. Avatar for Jobriq 231. Jobriq Lv 1 1 pt. 8,784
  2. Avatar for Susanne 232. Susanne Lv 1 1 pt. 8,780
  3. Avatar for Susume 233. Susume Lv 1 1 pt. 8,777
  4. Avatar for telesphore4 234. telesphore4 Lv 1 1 pt. 8,771
  5. Avatar for tristanvanhaaren 235. tristanvanhaaren Lv 1 1 pt. 8,764
  6. Avatar for SaveVMK 236. SaveVMK Lv 1 1 pt. 8,761
  7. Avatar for guineapig 237. guineapig Lv 1 1 pt. 8,735
  8. Avatar for lacie 238. lacie Lv 1 1 pt. 8,731
  9. Avatar for lastdread 239. lastdread Lv 1 1 pt. 8,667
  10. Avatar for AoxomoxoA 240. AoxomoxoA Lv 1 1 pt. 8,661

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (which has the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=65

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 51 is highly predicted to be in a sheet. However, the Valine at residue 10 is not predicted to be anything.