Placeholder image of a protein
Icon representing a puzzle

570: CASP10 Target T0700

Closed since almost 14 years ago

Advanced Overall Prediction

Summary

Created
June 05, 2012
Expires
Max points
100
Description

The eighth CASP10 target is not an easy one, but at least it's only 86 residues. We are providing you with 5 different templates, before giving you the server predictions once they are released. Please try out all 5 templates as they have different topologies and we don't know which one is correct. More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Void Crushers
    1. Void Crushers
    100 pts. 10,015
  2. Avatar for Contenders 2. Contenders 84 pts. 10,006
  3. Avatar for Anthropic Dreams 3. Anthropic Dreams 70 pts. 9,978
  4. Avatar for Go Science 4. Go Science 57 pts. 9,911
  5. Avatar for foldeRNA 5. foldeRNA 47 pts. 9,908
  6. Avatar for FoldIt@Netherlands 6. FoldIt@Netherlands 38 pts. 9,886
  7. Avatar for L'Alliance Francophone 7. L'Alliance Francophone 30 pts. 9,760
  8. Avatar for HMT heritage 8. HMT heritage 24 pts. 9,707
  9. Avatar for Gargleblasters 9. Gargleblasters 19 pts. 9,683
  10. Avatar for Deleted group 10. Deleted group pts. 9,631
  1. Avatar for cbwest 21. cbwest Lv 1 72 pts. 9,840
  2. Avatar for smilingone 22. smilingone Lv 1 70 pts. 9,839
  3. Avatar for Deleted player 23. Deleted player pts. 9,822
  4. Avatar for katling 24. katling Lv 1 68 pts. 9,821
  5. Avatar for krulon 25. krulon Lv 1 67 pts. 9,821
  6. Avatar for randomlil 26. randomlil Lv 1 66 pts. 9,820
  7. Avatar for pauldunn 27. pauldunn Lv 1 65 pts. 9,814
  8. Avatar for jakbinimbol 28. jakbinimbol Lv 1 63 pts. 9,812
  9. Avatar for rsosborne 29. rsosborne Lv 1 62 pts. 9,809
  10. Avatar for spdenne 30. spdenne Lv 1 61 pts. 9,794

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=101
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 11, 19, 36, 61, 63 & 71 are highly predicted to be in a helix. However, the Leucines at residues 7 & 29 are predicted to be anything.
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3l2o
http://www.pdb.org/pdb/explore/explore.do?structureId=3mks
http://www.pdb.org/pdb/explore/explore.do?structureId=2p9x
http://www.pdb.org/pdb/explore/explore.do?structureId=1yo7
http://www.pdb.org/pdb/explore/explore.do?structureId=1kx9