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573: Advanced CASP10 Refinement Puzzle: TR663

Closed since almost 14 years ago

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Summary

Created
June 10, 2012
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Max points
100
Description

This puzzle was closed and reposted as puzzle 573b (identical starting model but with the alignment tool, so you can use the Cut Tool) based on this suggestion: http://fold.it/portal/node/992917#comment-18188 You can manually save any solutions from this puzzle and load them in 573b.

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Comments

beta_helix Staff Lv 1

Here is the CASP link for this Refinement target:
http://predictioncenter.org/casp10/target.cgi?id=103&view=refinement
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 32 & 115 are highly predicted to be in a sheet. However, the Leucine at residue 103 is predicted to be in a helix.

mottiger Lv 1

just to improve the handling of the protein you could make an alignment puzzle out of it, so that we can use the cut tool