574: CASP10 Target T0709

Closed since almost 14 years ago

Summary

• Created: June 11, 2012
• Expires: June 16, 2012 at 13:00 UTC
• Max points: 100

Description

The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.

Top groups

• 11. SETI.Germany 10 pts. 8,438
• 12. Russian team 8 pts. 8,431
• 13. putting the eat in meat 6 pts. 8,398
• 14. Deleted group pts. 8,380
• 15. Atlanta 3 pts. 8,376
• 16. 7Monkeys 2 pts. 8,363
• 17. Freedom Folders 2 pts. 8,359
• 18. xkcd 1 pt. 8,274
• 19. Eὕρηκα! Heureka! 1 pt. 8,271
• 20. Biology-4th 1 pt. 8,214

Top evolvers

• 1. smilingone 100 pts. 8,587
• 2. Hanto_FZ140E_4G 83 pts. 8,581
• 3. B_2 69 pts. 8,580
• 4. pauldunn 56 pts. 8,579
• 5. barbaranne 45 pts. 8,555
• 6. bertro 36 pts. 8,554
• 7. keithv 29 pts. 8,539
• 8. alwen 23 pts. 8,538
• 9. Deleted player pts. 8,521
• 10. Wildcat777 14 pts. 8,518

Comments

[beta_helix]

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h