Placeholder image of a protein
Icon representing a puzzle

574: CASP10 Target T0709

Closed since almost 14 years ago

Intermediate Overall Prediction

Summary

Created
June 11, 2012
Expires
Max points
100
Description

The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Nerdfighters 21. Nerdfighters 1 pt. 8,210
  2. Avatar for Geekdo 22. Geekdo 1 pt. 8,153
  3. Avatar for Skeptics Guide to the Universe 23. Skeptics Guide to the Universe 1 pt. 8,112
  4. Avatar for Mojo Risin' 24. Mojo Risin' 1 pt. 8,059
  5. Avatar for CHNO Junkies 25. CHNO Junkies 1 pt. 8,011
  6. Avatar for Czech National Team 26. Czech National Team 1 pt. 2,952
  7. Avatar for Deleted group 27. Deleted group pts. 2,952
  8. Avatar for DSN @ Home 28. DSN @ Home 1 pt. 2,952
  1. Avatar for SKSbell 121. SKSbell Lv 1 3 pts. 8,362
  2. Avatar for weurhartdezirez 122. weurhartdezirez Lv 1 3 pts. 8,359
  3. Avatar for djag 123. djag Lv 1 3 pts. 8,358
  4. Avatar for wenskye 124. wenskye Lv 1 3 pts. 8,357
  5. Avatar for monkry 125. monkry Lv 1 3 pts. 8,347
  6. Avatar for mitarcher 126. mitarcher Lv 1 3 pts. 8,344
  7. Avatar for darioarena 127. darioarena Lv 1 3 pts. 8,344
  8. Avatar for yoyo washington 128. yoyo washington Lv 1 3 pts. 8,342
  9. Avatar for barbaranne 129. barbaranne Lv 1 3 pts. 8,341
  10. Avatar for lacie 130. lacie Lv 1 2 pts. 8,340

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h