Placeholder image of a protein
Icon representing a puzzle

574: CASP10 Target T0709

Closed since almost 14 years ago

Intermediate Overall Prediction

Summary

Created
June 11, 2012
Expires
Max points
100
Description

The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Nerdfighters 21. Nerdfighters 1 pt. 8,210
  2. Avatar for Geekdo 22. Geekdo 1 pt. 8,153
  3. Avatar for Skeptics Guide to the Universe 23. Skeptics Guide to the Universe 1 pt. 8,112
  4. Avatar for Mojo Risin' 24. Mojo Risin' 1 pt. 8,059
  5. Avatar for CHNO Junkies 25. CHNO Junkies 1 pt. 8,011
  6. Avatar for Czech National Team 26. Czech National Team 1 pt. 2,952
  7. Avatar for Deleted group 27. Deleted group pts. 2,952
  8. Avatar for DSN @ Home 28. DSN @ Home 1 pt. 2,952
  1. Avatar for enszyme 31. enszyme Lv 1 51 pts. 8,490
  2. Avatar for tscherulli 32. tscherulli Lv 1 50 pts. 8,487
  3. Avatar for Incongruous 33. Incongruous Lv 1 49 pts. 8,485
  4. Avatar for tallguy-13088 34. tallguy-13088 Lv 1 48 pts. 8,478
  5. Avatar for Steven Pletsch 35. Steven Pletsch Lv 1 47 pts. 8,478
  6. Avatar for packer 36. packer Lv 1 45 pts. 8,477
  7. Avatar for caglar 37. caglar Lv 1 44 pts. 8,476
  8. Avatar for nemo7731 38. nemo7731 Lv 1 43 pts. 8,466
  9. Avatar for jecauril 39. jecauril Lv 1 42 pts. 8,466
  10. Avatar for brow42 40. brow42 Lv 1 41 pts. 8,465

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h