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574: CASP10 Target T0709

Closed since almost 14 years ago

Intermediate Overall Prediction

Summary

Created: June 11, 2012
Expires: June 16, 2012 at 13:00 UTC
Max points: 100

Description

The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.

Top groups

21. Nerdfighters 1 pt. 8,210
22. Geekdo 1 pt. 8,153
23. Skeptics Guide to the Universe 1 pt. 8,112
24. Mojo Risin' 1 pt. 8,059
25. CHNO Junkies 1 pt. 8,011
26. Czech National Team 1 pt. 2,952
27. Deleted group pts. 2,952
28. DSN @ Home 1 pt. 2,952

41. Alistair69 Lv 1 40 pts. 8,462
42. mimi Lv 1 39 pts. 8,461
43. ViJay7019 Lv 1 38 pts. 8,461
44. randomlil Lv 1 37 pts. 8,459
45. B_2 Lv 1 36 pts. 8,459
46. Madde Lv 1 35 pts. 8,459
47. jlarryb Lv 1 34 pts. 8,456
48. pvc78 Lv 1 34 pts. 8,456
49. bendbob Lv 1 33 pts. 8,453
50. Flagg65a Lv 1 32 pts. 8,452

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
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Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h