574: CASP10 Target T0709

Closed since almost 14 years ago

Summary

• Created: June 11, 2012
• Expires: June 16, 2012 at 13:00 UTC
• Max points: 100

Description

The ninth CASP10 should be a lot easier, it's only 33 residues. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. Note the short deadline, since this target is so small. More details about this CASP target are in the puzzle comments.

Top groups

• 1. Go Science 100 pts. 8,587
• 2. Anthropic Dreams 83 pts. 8,561
• 3. foldeRNA 69 pts. 8,554
• 4. Contenders 56 pts. 8,539
• 5. Void Crushers 45 pts. 8,518
• 6. Gargleblasters 36 pts. 8,516
• 7. L'Alliance Francophone 29 pts. 8,514
• 8. Deleted group pts. 8,478
• 9. FoldIt@Netherlands 18 pts. 8,461
• 10. HMT heritage 14 pts. 8,439

Top soloists

• 71. Deleted player pts. 8,430
• 72. hpaege 17 pts. 8,428
• 73. harp 17 pts. 8,428
• 74. jtollenaar 16 pts. 8,427
• 75. Deleted player pts. 8,427
• 76. Jesse Pinkman 15 pts. 8,424
• 77. jobo0502 15 pts. 8,423
• 78. gramps 15 pts. 8,421
• 79. Dhalion 14 pts. 8,419
• 80. Close At Hand 14 pts. 8,418

Comments

[beta_helix]

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
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Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h