Placeholder image of a protein
Icon representing a puzzle

582: Beginner CASP10 Refinement Puzzle: TR674

Closed since almost 14 years ago

Beginner Overall Prediction

Summary


Created
June 22, 2012
Expires
Max points
100
Description

This is the sixth CASP10 Refinement Target. This model was the best human prediction for target T0674. We've been told that ~84% of this model matches the native, so you just need to find which 16% to refine! More info in the puzzle comments.

Top groups


  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 10,987
  2. Avatar for Natural Abilities 22. Natural Abilities 1 pt. 10,897
  3. Avatar for Nerdfighters 23. Nerdfighters 1 pt. 10,827
  4. Avatar for Czech National Team 24. Czech National Team 1 pt. 10,795
  5. Avatar for Deleted group 25. Deleted group pts. 10,795
  6. Avatar for SETIKAH@KOREA 27. SETIKAH@KOREA 1 pt. 10,725
  7. Avatar for Deleted group 28. Deleted group pts. 10,708
  8. Avatar for Geekdo 29. Geekdo 1 pt. 10,319
  9. Avatar for DSN @ Home 30. DSN @ Home 1 pt. 9,814

  1. Avatar for LukasMinar 271. LukasMinar Lv 1 1 pt. 10,428
  2. Avatar for WhiteShadow13 272. WhiteShadow13 Lv 1 1 pt. 10,345
  3. Avatar for salish99 273. salish99 Lv 1 1 pt. 10,319
  4. Avatar for bhattel 274. bhattel Lv 1 1 pt. 10,319
  5. Avatar for Dj-P 275. Dj-P Lv 1 1 pt. 10,256
  6. Avatar for michelw 276. michelw Lv 1 1 pt. 10,243
  7. Avatar for Roukess 277. Roukess Lv 1 1 pt. 10,187
  8. Avatar for aspadistra 278. aspadistra Lv 1 1 pt. 9,814
  9. Avatar for hanski 279. hanski Lv 1 1 pt. 9,719
  10. Avatar for nhihaoma 280. nhihaoma Lv 1 1 pt. 9,302

Comments


beta_helix Staff Lv 1

This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=131&view=refinement

Note that the organizers gave us this hint:

"Starting model GDT_TS=84."

GDT_TS=84 essentially means that 84% of the model superimposes correctly onto the native structure:

Secondary Structure Predictions below:

beta_helix Staff Lv 1

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 10, 12 & 45 are highly predicted to be part of a helix. However, the Valine at residue 93 is predicted to be in a sheet.