Placeholder image of a protein
Icon representing a puzzle

590: CASP10 Target T0728

Closed since over 13 years ago

Intermediate Overall Prediction

Summary

Created
July 03, 2012
Expires
Max points
100
Description

The twelfth CASP10 target is another tough one, as it's 154 residues. We are providing you with 4 different templates, but all of them have a similar topology (that we hope is the correct one!). We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Skeptics Guide to the Universe 21. Skeptics Guide to the Universe 1 pt. 8,774
  2. Avatar for Czech National Team 22. Czech National Team 1 pt. 8,704
  3. Avatar for Geekdo 23. Geekdo 1 pt. 7,570
  4. Avatar for Team Canada 24. Team Canada 1 pt. 7,518
  5. Avatar for Extraterrestrials 25. Extraterrestrials 1 pt. 4,922
  6. Avatar for DSN @ Home 26. DSN @ Home 1 pt. 4,922
  1. Avatar for el-don 231. el-don Lv 1 1 pt. 4,922
  2. Avatar for ZeddicusZulZorrandr 232. ZeddicusZulZorrandr Lv 1 1 pt. 4,922
  3. Avatar for Simek 233. Simek Lv 1 1 pt. 4,922
  4. Avatar for AngelPan 234. AngelPan Lv 1 1 pt. 4,922
  5. Avatar for georged 235. georged Lv 1 1 pt. 4,922
  6. Avatar for Flykiller 236. Flykiller Lv 1 1 pt. 4,922
  7. Avatar for Vie 237. Vie Lv 1 1 pt. 4,922

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=148
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 8, & 17 are highly predicted to be in a helix. However, the Leucine at residue 60 is predicted to be in a sheet.
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3d33
http://www.pdb.org/pdb/explore/explore.do?structureId=2eig
http://www.pdb.org/pdb/explore/explore.do?structureId=3jqw
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b