Placeholder image of a protein
Icon representing a puzzle

590: CASP10 Target T0728

Closed since over 13 years ago

Intermediate Overall Prediction

Summary

Created
July 03, 2012
Expires
Max points
100
Description

The twelfth CASP10 target is another tough one, as it's 154 residues. We are providing you with 4 different templates, but all of them have a similar topology (that we hope is the correct one!). We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 11,646
  2. Avatar for Beta Folders 2. Beta Folders 82 pts. 11,611
  3. Avatar for Anthropic Dreams 3. Anthropic Dreams 66 pts. 11,602
  4. Avatar for Go Science 4. Go Science 53 pts. 11,380
  5. Avatar for L'Alliance Francophone 5. L'Alliance Francophone 42 pts. 11,366
  6. Avatar for foldeRNA 6. foldeRNA 33 pts. 11,227
  7. Avatar for Russian team 7. Russian team 26 pts. 11,203
  8. Avatar for Void Crushers 8. Void Crushers 20 pts. 11,181
  9. Avatar for HMT heritage 9. HMT heritage 15 pts. 10,969
  10. Avatar for Gargleblasters 10. Gargleblasters 11 pts. 10,962
  1. Avatar for enszyme 11. enszyme Lv 1 81 pts. 11,366
  2. Avatar for meatexplosion 12. meatexplosion Lv 1 79 pts. 11,352
  3. Avatar for christioanchauvin 13. christioanchauvin Lv 1 78 pts. 11,341
  4. Avatar for petr2 14. petr2 Lv 1 76 pts. 11,317
  5. Avatar for Ch Garnier 15. Ch Garnier Lv 1 74 pts. 11,313
  6. Avatar for pauldunn 16. pauldunn Lv 1 73 pts. 11,313
  7. Avatar for PRL 17. PRL Lv 1 71 pts. 11,284
  8. Avatar for bobcat 18. bobcat Lv 1 69 pts. 11,273
  9. Avatar for brow42 19. brow42 Lv 1 68 pts. 11,271
  10. Avatar for marie_s 20. marie_s Lv 1 66 pts. 11,259

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=148
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 8, & 17 are highly predicted to be in a helix. However, the Leucine at residue 60 is predicted to be in a sheet.
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3d33
http://www.pdb.org/pdb/explore/explore.do?structureId=2eig
http://www.pdb.org/pdb/explore/explore.do?structureId=3jqw
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b