Placeholder image of a protein
Icon representing a puzzle

590: CASP10 Target T0728

Closed since over 13 years ago

Intermediate Overall Prediction

Summary

Created
July 03, 2012
Expires
Max points
100
Description

The twelfth CASP10 target is another tough one, as it's 154 residues. We are providing you with 4 different templates, but all of them have a similar topology (that we hope is the correct one!). We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 11,646
  2. Avatar for Beta Folders 2. Beta Folders 82 pts. 11,611
  3. Avatar for Anthropic Dreams 3. Anthropic Dreams 66 pts. 11,602
  4. Avatar for Go Science 4. Go Science 53 pts. 11,380
  5. Avatar for L'Alliance Francophone 5. L'Alliance Francophone 42 pts. 11,366
  6. Avatar for foldeRNA 6. foldeRNA 33 pts. 11,227
  7. Avatar for Russian team 7. Russian team 26 pts. 11,203
  8. Avatar for Void Crushers 8. Void Crushers 20 pts. 11,181
  9. Avatar for HMT heritage 9. HMT heritage 15 pts. 10,969
  10. Avatar for Gargleblasters 10. Gargleblasters 11 pts. 10,962
  1. Avatar for yoyo washington 61. yoyo washington Lv 1 24 pts. 10,732
  2. Avatar for goastano 62. goastano Lv 1 23 pts. 10,719
  3. Avatar for Mr_Jolty 63. Mr_Jolty Lv 1 22 pts. 10,683
  4. Avatar for nemo7731 64. nemo7731 Lv 1 22 pts. 10,657
  5. Avatar for harp 65. harp Lv 1 21 pts. 10,650
  6. Avatar for tallguy-13088 66. tallguy-13088 Lv 1 20 pts. 10,649
  7. Avatar for jobo0502 67. jobo0502 Lv 1 20 pts. 10,645
  8. Avatar for Jean-Bob 68. Jean-Bob Lv 1 19 pts. 10,635
  9. Avatar for Museka 69. Museka Lv 1 19 pts. 10,628
  10. Avatar for heather-1 70. heather-1 Lv 1 18 pts. 10,617

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=148
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 8, & 17 are highly predicted to be in a helix. However, the Leucine at residue 60 is predicted to be in a sheet.
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3d33
http://www.pdb.org/pdb/explore/explore.do?structureId=2eig
http://www.pdb.org/pdb/explore/explore.do?structureId=3jqw
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b