Foldit

592: CASP10 Target T0730

Closed since over 13 years ago

Summary

Created: July 05, 2012
Expires: July 14, 2012 at 16:00 UTC
Max points: 100

Description

The thirteenth CASP10 target is another big one: 167 residues. We are providing you with 5 different templates, but two of them are the same protein with different alignments. We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.

Top groups

11. Russian team 14 pts. 10,760
12. Gargleblasters 11 pts. 10,749
13. putting the eat in meat 8 pts. 10,714
14. FoldIt@Netherlands 6 pts. 10,702
15. Androids 5 pts. 10,377
16. Natural Abilities 4 pts. 10,342
17. 7Monkeys 3 pts. 10,125
18. Piratenpartei Deutschland 2 pts. 10,076
19. Deleted group pts. 9,684
20. Mojo Risin' 1 pt. 9,477

221. kaisrin Lv 1 1 pt. 7,495
222. brett.chiltonjones Lv 1 1 pt. 7,492
223. khron0s Lv 1 1 pt. 7,492
224. the_qwert12_34 Lv 1 1 pt. 7,488
225. Blenderhands Lv 1 1 pt. 7,472
226. reh9650 Lv 1 1 pt. 7,431
227. zharennyi_pelmen Lv 1 1 pt. 7,410
228. Modimo Lv 1 1 pt. 7,353
229. aspadistra Lv 1 1 pt. 7,311
230. Aurigae Lv 1 1 pt. 7,305

Comments

beta_helix Staff Lv 1

July 06, 2012

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=150
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 7, 13 & 18 are highly predicted to be in a helix. However, the Leucines at residues 46, 129, 134 & 149 are predicted to be in a sheet.
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Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1nep
http://www.pdb.org/pdb/explore/explore.do?structureId=3pdd
http://www.pdb.org/pdb/explore/explore.do?structureId=3qc5
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b