592: CASP10 Target T0730

Closed since over 13 years ago

Summary

• Created: July 05, 2012
• Expires: July 14, 2012 at 16:00 UTC
• Max points: 100

Description

The thirteenth CASP10 target is another big one: 167 residues. We are providing you with 5 different templates, but two of them are the same protein with different alignments. We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.

Top groups

• 21. Extraterrestrials 1 pt. 9,443
• 22. Crunching Family 1 pt. 9,174
• 23. Skeptics Guide to the Universe 1 pt. 9,157
• 24. Team China 1 pt. 8,553
• 25. Geekdo 1 pt. 8,298
• 26. 'Merica! 1 pt. 8,250
• 27. Team Canada 1 pt. 7,504
• 28. DSN @ Home 1 pt. 7,311
• 29. Eὕρηκα! Heureka! 1 pt. 2,140
• 30. ROMANIA Team 1 pt. 2,140

Top soloists

• 81. Kevonni 18 pts. 10,513
• 82. Merf 17 pts. 10,510
• 83. Bautho 17 pts. 10,506
• 84. pgiles 17 pts. 10,505
• 85. justjustin 16 pts. 10,472
• 86. Jim Fraser 16 pts. 10,437
• 87. heather-1 15 pts. 10,433
• 88. drumpeter18yrs9yrs 15 pts. 10,417
• 89. wudoo 15 pts. 10,377
• 90. harvardman 14 pts. 10,375

Comments

[beta_helix]

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=150
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 7, 13 & 18 are highly predicted to be in a helix. However, the Leucines at residues 46, 129, 134 & 149 are predicted to be in a sheet.
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1nep
http://www.pdb.org/pdb/explore/explore.do?structureId=3pdd
http://www.pdb.org/pdb/explore/explore.do?structureId=3qc5
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b