Foldit

592: CASP10 Target T0730

Closed since over 13 years ago

Summary

Created: July 05, 2012
Expires: July 14, 2012 at 16:00 UTC
Max points: 100

Description

The thirteenth CASP10 target is another big one: 167 residues. We are providing you with 5 different templates, but two of them are the same protein with different alignments. We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.

Top groups

31. Deleted group pts. 2,140

11. martinzblavy Lv 1 83 pts. 11,516
12. jakbinimbol Lv 1 82 pts. 11,501
13. pauldunn Lv 1 80 pts. 11,493
14. Deleted player pts. 11,491
15. CharlieFortsConscience Lv 1 77 pts. 11,486
16. Wildcat777 Lv 1 76 pts. 11,473
17. bertro Lv 1 74 pts. 11,470
18. Timo van der Laan Lv 1 73 pts. 11,448
19. stg123123 Lv 1 71 pts. 11,435
20. bobcat Lv 1 70 pts. 11,429

Comments

beta_helix Staff Lv 1

July 06, 2012

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=150
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 7, 13 & 18 are highly predicted to be in a helix. However, the Leucines at residues 46, 129, 134 & 149 are predicted to be in a sheet.
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1nep
http://www.pdb.org/pdb/explore/explore.do?structureId=3pdd
http://www.pdb.org/pdb/explore/explore.do?structureId=3qc5
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b