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592: CASP10 Target T0730

Closed since over 13 years ago

Advanced Overall Prediction

Summary

Created
July 05, 2012
Expires
Max points
100
Description

The thirteenth CASP10 target is another big one: 167 residues. We are providing you with 5 different templates, but two of them are the same protein with different alignments. We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.

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Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=150
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 7, 13 & 18 are highly predicted to be in a helix. However, the Leucines at residues 46, 129, 134 & 149 are predicted to be in a sheet.
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1nep
http://www.pdb.org/pdb/explore/explore.do?structureId=3pdd
http://www.pdb.org/pdb/explore/explore.do?structureId=3qc5
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b