637: De-novo Freestyle 16

Closed since over 13 years ago

Summary

• Created: October 04, 2012
• Expires: October 10, 2012 at 23:59 UTC
• Max points: 100

Description

This currently unsolved short protein does not have any templates that we can use, so we are giving it to you as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are posted in the puzzle comments.

Top groups

• 1. Anthropic Dreams 100 pts. 9,831
• 2. Void Crushers 83 pts. 9,765
• 3. foldeRNA 69 pts. 9,736
• 4. Contenders 56 pts. 9,713
• 5. Beta Folders 45 pts. 9,675
• 6. L'Alliance Francophone 36 pts. 9,623
• 7. Go Science 29 pts. 9,611
• 8. Gargleblasters 23 pts. 9,596
• 9. FoldIt@Netherlands 18 pts. 9,594
• 10. Deleted group pts. 9,517

Top evolvers

• 21. westrel3 2 pts. 9,614
• 22. packer 2 pts. 9,609
• 23. montadar 1 pt. 9,593
• 24. BootsMcGraw 1 pt. 9,564
• 25. Alistair69 1 pt. 9,521
• 26. Roukess 1 pt. 9,521
• 27. christioanchauvin 1 pt. 9,511
• 28. mirp 1 pt. 9,506
• 29. goastano 1 pt. 9,491
• 30. greepski 1 pt. 9,454

Comments

[beta_helix]

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 20 & 45 are highly predicted to be part of a sheet. However, the Valine at residue 2 is not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).

[spmm]

this has a pivot around 36-43