Placeholder image of a protein
Icon representing a puzzle

639: De-novo Freestyle 17

Closed since over 13 years ago

Advanced Overall Prediction

Summary

Created
October 10, 2012
Expires
Max points
100
Description

This currently unsolved short protein does not have any templates that we can use, so to prepare for CASP ROLL we are giving it to you as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are provided on the starting model, with more details posted in the puzzle comments.

Top groups

  1. Avatar for Mojo Risin' 21. Mojo Risin' 1 pt. 9,587
  2. Avatar for CHNO Junkies 22. CHNO Junkies 1 pt. 9,569
  3. Avatar for Natural Abilities 23. Natural Abilities 1 pt. 9,565
  4. Avatar for Deleted group 24. Deleted group pts. 9,539
  5. Avatar for Street Smarts 25. Street Smarts 1 pt. 9,286
  6. Avatar for Androids 26. Androids 1 pt. 9,257
  7. Avatar for GENE 433 27. GENE 433 1 pt. 9,138
  8. Avatar for Piratenpartei Deutschland 28. Piratenpartei Deutschland 1 pt. 8,902
  9. Avatar for Rice Biochemistry 29. Rice Biochemistry 1 pt. 8,517
  10. Avatar for Czech National Team 30. Czech National Team 1 pt. 8,390
  1. Avatar for SKSbell 61. SKSbell Lv 1 38 pts. 10,262
  2. Avatar for Deleted player 62. Deleted player pts. 10,253
  3. Avatar for manu8170 63. manu8170 Lv 1 36 pts. 10,252
  4. Avatar for Aubade00 64. Aubade00 Lv 1 36 pts. 10,235
  5. Avatar for phi16 65. phi16 Lv 1 35 pts. 10,232
  6. Avatar for Cyzaki 66. Cyzaki Lv 1 34 pts. 10,230
  7. Avatar for harvardman 67. harvardman Lv 1 34 pts. 10,226
  8. Avatar for meatexplosion 68. meatexplosion Lv 1 33 pts. 10,221
  9. Avatar for larry25427 69. larry25427 Lv 1 32 pts. 10,220
  10. Avatar for Jean-Bob 70. Jean-Bob Lv 1 32 pts. 10,217

Comments

beta_helix Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 85 & 44 are highly predicted to be part of a sheet. However, the Valines at residues 12 & 102 are not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).