639: De-novo Freestyle 17

Closed since over 13 years ago

Summary

• Created: October 10, 2012
• Expires: October 18, 2012 at 08:00 UTC
• Max points: 100

Description

This currently unsolved short protein does not have any templates that we can use, so to prepare for CASP ROLL we are giving it to you as an extended chain. Use all your skills to fold it up as best as you can. The secondary structure predictions are provided on the starting model, with more details posted in the puzzle comments.

Top groups

• 1. Anthropic Dreams 100 pts. 10,781
• 2. Contenders 85 pts. 10,751
• 3. Beta Folders 72 pts. 10,713
• 4. Void Crushers 61 pts. 10,700
• 5. foldeRNA 51 pts. 10,589
• 6. Deleted group pts. 10,491
• 7. Brony@Home 35 pts. 10,484
• 8. L'Alliance Francophone 28 pts. 10,402
• 9. Go Science 23 pts. 10,379
• 10. Gargleblasters 19 pts. 10,344

Top soloists

• 11. johnmitch 86 pts. 10,627
• 12. eikem 85 pts. 10,610
• 13. auntdeen 84 pts. 10,595
• 14. gmn 82 pts. 10,591
• 15. cbwest 81 pts. 10,589
• 16. smilingone 80 pts. 10,585
• 17. Bletchley Park 79 pts. 10,568
• 18. marie_s 77 pts. 10,558
• 19. drjr 76 pts. 10,558
• 20. bendbob 75 pts. 10,556

Comments

[beta_helix]

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 85 & 44 are highly predicted to be part of a sheet. However, the Valines at residues 12 & 102 are not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).