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645: CASP ROLL Target R0023

Closed since over 13 years ago

Summary

Created: October 19, 2012
Expires: October 29, 2012 at 21:00 UTC
Max points: 100

Description

Another CASP ROLL target. We are again providing you with 3 very different templates for now, and will give you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

11. Richard Dawkins Foundation 14 pts. 9,810
12. Origami 2 11 pts. 9,786
13. HMT heritage 8 pts. 9,766
14. Freedom Folders 6 pts. 9,740
15. Foldit UK 5 pts. 9,738
16. FoldIt@Netherlands 4 pts. 9,682
17. Russian team 3 pts. 9,661
18. Natural Abilities 2 pts. 9,651
19. SETI.Germany 2 pts. 9,533
20. CHNO Junkies 1 pt. 9,426

11. mimi Lv 1 84 pts. 10,149
12. brow42 Lv 1 83 pts. 10,148
13. martinzblavy Lv 1 81 pts. 10,142
14. Ch Garnier Lv 1 80 pts. 10,126
15. pauldunn Lv 1 79 pts. 10,122
16. Hanto_FZ140E_4G Lv 1 77 pts. 10,108
17. yoyo washington Lv 1 76 pts. 10,098
18. smilingone Lv 1 74 pts. 10,096
19. micheldeweerd Lv 1 73 pts. 10,096
20. Incongruous Lv 1 72 pts. 10,095

Comments

beta_helix Staff Lv 1

October 19, 2012

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=66
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Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 68 & 43 are highly predicted to be part of a sheet. However, the Valine at residue 25 is not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1sji http://www.pdb.org/pdb/explore/explore.do?structureId=2eua http://www.pdb.org/pdb/explore/explore.do?structureId=3ii2