Foldit

645: CASP ROLL Target R0023

Closed since over 13 years ago

Advanced Advanced Overall Overall Prediction Prediction CASP ROLL CASP ROLL

Summary

Created: October 19, 2012
Expires: October 29, 2012 at 21:00 UTC
Max points: 100

Description

Another CASP ROLL target. We are again providing you with 3 very different templates for now, and will give you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

11. Richard Dawkins Foundation 14 pts. 9,810
12. Origami 2 11 pts. 9,786
13. HMT heritage 8 pts. 9,766
14. Freedom Folders 6 pts. 9,740
15. Foldit UK 5 pts. 9,738
16. FoldIt@Netherlands 4 pts. 9,682
17. Russian team 3 pts. 9,661
18. Natural Abilities 2 pts. 9,651
19. SETI.Germany 2 pts. 9,533
20. CHNO Junkies 1 pt. 9,426

31. gmn Lv 1 58 pts. 10,043
32. truestone Lv 1 57 pts. 10,036
33. utaca Lv 1 56 pts. 10,031
34. mirp Lv 1 55 pts. 10,012
35. jakbinimbol Lv 1 54 pts. 10,004
36. lynnai Lv 1 53 pts. 9,995
37. auntdeen Lv 1 52 pts. 9,993
38. montadar Lv 1 51 pts. 9,990
39. spmm Lv 1 50 pts. 9,989
40. christioanchauvin Lv 1 49 pts. 9,981

Comments

beta_helix Staff Lv 1

October 19, 2012

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=66
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Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 68 & 43 are highly predicted to be part of a sheet. However, the Valine at residue 25 is not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
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Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1sji http://www.pdb.org/pdb/explore/explore.do?structureId=2eua http://www.pdb.org/pdb/explore/explore.do?structureId=3ii2