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645: CASP ROLL Target R0023

Closed since over 13 years ago

Advanced Overall Prediction CASP ROLL

Summary

Created
October 19, 2012
Expires
Max points
100
Description

Another CASP ROLL target. We are again providing you with 3 very different templates for now, and will give you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

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  9. Avatar for marie_s 49. marie_s Lv 1 41 pts. 9,924
  10. Avatar for hpaege 50. hpaege Lv 1 40 pts. 9,922

Comments

beta_helix Staff Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=66
__________________

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 68 & 43 are highly predicted to be part of a sheet. However, the Valine at residue 25 is not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1sji http://www.pdb.org/pdb/explore/explore.do?structureId=2eua http://www.pdb.org/pdb/explore/explore.do?structureId=3ii2