645: CASP ROLL Target R0023

Closed since over 13 years ago

Summary

• Created: October 19, 2012
• Expires: October 29, 2012 at 21:00 UTC
• Max points: 100

Description

Another CASP ROLL target. We are again providing you with 3 very different templates for now, and will give you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

• 1. Anthropic Dreams 100 pts. 10,351
• 2. Contenders 85 pts. 10,315
• 3. Go Science 71 pts. 10,313
• 4. Beta Folders 60 pts. 10,274
• 5. foldeRNA 49 pts. 10,265
• 6. L'Alliance Francophone 41 pts. 10,128
• 7. Deleted group pts. 10,108
• 8. Void Crushers 27 pts. 10,086
• 9. Gargleblasters 22 pts. 10,046
• 10. Brony@Home 17 pts. 9,890

Top soloists

• 1. gdnskye 100 pts. 10,344
• 2. doug.ehlert 99 pts. 10,303
• 3. stg123123 97 pts. 10,274
• 4. bertro 95 pts. 10,265
• 5. Aubade00 94 pts. 10,255
• 6. Susume 92 pts. 10,227
• 7. karstenw 91 pts. 10,223
• 8. Bletchley Park 89 pts. 10,166
• 9. fishercat 87 pts. 10,165
• 10. spvincent 86 pts. 10,161

Comments

[beta_helix]

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=66
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Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 68 & 43 are highly predicted to be part of a sheet. However, the Valine at residue 25 is not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
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Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1sji http://www.pdb.org/pdb/explore/explore.do?structureId=2eua http://www.pdb.org/pdb/explore/explore.do?structureId=3ii2